Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5843

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14210 and 14211 are separated by 290 nucleotides14211 and 14212 are separated by 323 nucleotides mRNA_5842: 14210 - K04508 TBL1 transducin (beta)-like 1, at 1,064,235 to 1,067,284 14210 mRNA_5843: 14211 - HMMPfam-Tim10/DDP family zinc finger-PF02953, at 1,067,575 to 1,068,136 14211 mRNA_5844: 14212 - HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF160240,SUPERFAMILY--SSF161111, at 1,068,460 to 1,070,269 14212

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
1,066,788 - 14210 mRNA_5842 0.84 -0.0
1,066,802 + 14210 mRNA_5842 0.84 +0.1
1,066,832 - 14210 mRNA_5842 0.85 +0.5
1,067,816 + 14211 mRNA_5843 0.43 -1.0
1,067,823 + 14211 mRNA_5843 0.44 +0.0
1,067,844 + 14211 mRNA_5843 0.48 -1.9
1,067,852 + 14211 mRNA_5843 0.49 +0.8
1,067,943 - 14211 mRNA_5843 0.65 +0.3
1,067,986 - 14211 mRNA_5843 0.73 -1.7
1,067,992 - 14211 mRNA_5843 0.74 -1.7
1,068,454 + -0.7
1,068,574 + +0.1
1,068,721 + 14212 mRNA_5844 0.14 +0.2
1,068,984 + 14212 mRNA_5844 0.29 +2.2

Or see this region's nucleotide sequence