Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5860

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14227 and 14228 are separated by 213 nucleotides14228 and 14229 are separated by 333 nucleotides mRNA_5859: 14227 - BLAST probable atp-binding cassette transporter [Ceraceosor..., at 1,104,171 to 1,104,734 14227 mRNA_5860: 14228 - K19770 RNASEK ribonuclease kappa, at 1,104,948 to 1,105,402 14228 mRNA_5861: 14229 - K16261 YAT yeast amino acid transporter, at 1,105,736 to 1,108,814 14229

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,104,003 - +0.4
1,104,941 - +0.6
1,104,944 + +0.6
1,105,054 - 14228 mRNA_5860 0.23 +0.6
1,105,092 + 14228 mRNA_5860 0.32 -0.1
1,105,254 + 14228 mRNA_5860 0.67 +0.7
1,105,380 - +0.3
1,105,384 + +0.5
1,105,389 - +0.2
1,105,513 - +0.4
1,105,961 + +0.1
1,106,062 - 14229 mRNA_5861 0.11 +2.8
1,106,085 + 14229 mRNA_5861 0.11 +0.6
1,106,095 + 14229 mRNA_5861 0.12 +0.3
1,106,377 + 14229 mRNA_5861 0.21 +0.7
1,106,378 - 14229 mRNA_5861 0.21 +0.0

Or see this region's nucleotide sequence