Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5869

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14236 and 14237 are separated by 341 nucleotides14237 and 14238 are separated by 193 nucleotides mRNA_5868: 14236 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,PRINTS-Isopenicillin N synthase signature-PR00682,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 1,123,241 to 1,124,381 14236 mRNA_5869: 14237 - K10808 RRM2 ribonucleoside-diphosphate reductase subunit M2, at 1,124,723 to 1,126,548 14237 mRNA_5870: 14238 - Hypothetical Protein, at 1,126,742 to 1,127,263 14238

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,123,944 - 14236 mRNA_5868 0.62 +0.4
1,123,955 - 14236 mRNA_5868 0.63 +1.2
1,124,221 + 14236 mRNA_5868 0.86 +0.3
1,124,274 - +0.5
1,124,301 + -1.4
1,126,638 + +0.5
1,126,649 + +0.7
1,126,659 + -0.1
1,126,668 + +0.0
1,126,668 + -0.2
1,126,670 - -0.8
1,126,670 - +0.8
1,126,686 + -0.3
1,126,686 + +0.9
1,126,701 - +0.5
1,126,712 - -0.7
1,126,726 - +0.0
1,126,739 - +0.5
1,126,744 + -1.3
1,126,790 + -0.2
1,126,795 - 14238 mRNA_5870 0.10 -0.1
1,126,796 + 14238 mRNA_5870 0.10 -0.1
1,126,813 + 14238 mRNA_5870 0.14 +0.7
1,126,814 + 14238 mRNA_5870 0.14 -0.7
1,126,967 - 14238 mRNA_5870 0.43 +0.3
1,126,972 - 14238 mRNA_5870 0.44 -0.4
1,127,106 - 14238 mRNA_5870 0.70 +0.8
1,127,114 - 14238 mRNA_5870 0.71 +1.4
1,127,143 - 14238 mRNA_5870 0.77 -0.6
1,127,145 + 14238 mRNA_5870 0.77 +0.9

Or see this region's nucleotide sequence