Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5901

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14268 and 14269 are separated by 168 nucleotides14269 and 14270 are separated by 417 nucleotides mRNA_5900: 14268 - KOG4778 Mitochondrial ribosomal protein L28, at 1,200,397 to 1,201,096 14268 mRNA_5901: 14269 - K07204 RAPTOR regulatory associated protein of mTOR, at 1,201,265 to 1,206,244 14269 mRNA_5902: 14270 - K08336 ATG12 ubiquitin-like protein ATG12, at 1,206,662 to 1,207,258 14270

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,200,331 - +1.1
1,200,342 - -0.8
1,200,343 + +0.5
1,200,353 + +1.1
1,200,359 + +0.4
1,200,363 + +1.9
1,200,378 + +0.4
1,200,391 + +3.2
1,201,127 + -0.5
1,201,380 - +1.5
1,206,267 - +0.3
1,206,404 - +1.1
1,206,412 - +1.0
1,206,415 + +0.8
1,206,534 - +0.2
1,206,547 + +0.0
1,206,719 + +1.1
1,206,841 - 14270 mRNA_5902 0.30 -0.0
1,207,139 - 14270 mRNA_5902 0.80 +0.9

Or see this region's nucleotide sequence