Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5931

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14298 and 14299 are separated by 146 nucleotides14299 and 14300 are separated by 851 nucleotides mRNA_5930: 14298 - Hypothetical Protein, at 1,261,131 to 1,261,763 14298 mRNA_5931: 14299 - SUPERFAMILY--SSF51695, at 1,261,910 to 1,263,239 14299 mRNA_5932: 14300 - Hypothetical Protein, at 1,264,091 to 1,265,765 14300

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,261,051 - +1.3
1,261,573 - 14298 mRNA_5930 0.70 +1.2
1,261,670 - 14298 mRNA_5930 0.85 +0.6
1,261,802 - -1.9
1,261,878 + +0.0
1,261,982 - +1.2
1,261,986 + -0.2
1,262,175 + 14299 mRNA_5931 0.20 +1.1
1,262,301 - 14299 mRNA_5931 0.29 -1.2
1,262,302 + 14299 mRNA_5931 0.29 -0.3
1,262,714 - 14299 mRNA_5931 0.60 +0.9
1,262,967 + 14299 mRNA_5931 0.79 +1.1
1,262,978 + 14299 mRNA_5931 0.80 +0.5
1,263,268 - -0.3
1,263,268 - -3.0
1,263,382 - +0.7
1,263,421 - +0.1
1,263,432 + -0.1
1,263,439 - -0.2
1,263,440 + +0.4
1,263,441 - -0.7
1,263,449 - -0.3
1,263,451 + -0.9
1,263,453 - -1.9
1,263,461 + -0.2
1,263,464 + -0.5
1,263,474 + +1.3
1,263,484 + +1.2
1,263,486 + +0.5
1,263,490 + +0.6
1,263,500 - +0.1
1,263,506 + -1.0
1,263,507 + -0.3
1,263,510 + -0.3
1,263,513 - +0.0
1,263,555 - +0.0
1,263,570 - +0.3
1,263,577 + -0.5
1,263,580 + -0.2
1,263,588 + +0.7
1,263,590 + +0.6
1,263,602 + +0.3
1,263,618 - +0.3
1,263,623 - -0.6
1,263,705 - +2.4
1,263,728 + +0.4
1,263,756 + -1.8
1,263,781 + -0.7
1,263,829 + -0.2
1,263,835 + -0.6
1,263,891 - +0.2
1,264,008 + +2.0
1,264,049 + -0.4

Or see this region's nucleotide sequence