Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5936

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14303 and 14304 are separated by 450 nucleotides14304 and 14305 are separated by 395 nucleotides mRNA_5935: 14303 - HMMPfam-Homeobox KN domain-PF05920,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SUPERFAMILY--SSF46689, at 1,270,620 to 1,271,852 14303 mRNA_5936: 14304 - HMMPfam-Homeobox domain-PF00046,HMMPfam-Predicted membrane protein (DUF2231)-PF09990,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689, at 1,272,303 to 1,276,279 14304 mRNA_5937: 14305 - Hypothetical Protein, at 1,276,675 to 1,277,757 14305

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
1,272,142 - +1.6
1,272,419 + +1.2
1,272,527 + +0.5
1,272,567 - +0.5
1,273,245 - 14304 mRNA_5936 0.24 +0.6
1,273,247 - 14304 mRNA_5936 0.24 +0.5
1,273,249 - 14304 mRNA_5936 0.24 +0.6
1,273,250 + 14304 mRNA_5936 0.24 -0.1
1,273,282 + 14304 mRNA_5936 0.25 +0.7
1,273,409 + 14304 mRNA_5936 0.28 -0.1
1,273,412 + 14304 mRNA_5936 0.28 +0.8
1,273,418 - 14304 mRNA_5936 0.28 +0.0
1,273,427 - 14304 mRNA_5936 0.28 +3.2
1,273,548 - 14304 mRNA_5936 0.31 +1.4
1,273,550 - 14304 mRNA_5936 0.31 -0.5
1,273,570 + 14304 mRNA_5936 0.32 +1.1
1,273,577 + 14304 mRNA_5936 0.32 -1.1
1,273,696 + 14304 mRNA_5936 0.35 -1.1
1,273,738 + 14304 mRNA_5936 0.36 -0.2
1,273,748 + 14304 mRNA_5936 0.36 -0.2
1,273,827 + 14304 mRNA_5936 0.38 +0.6
1,273,951 - 14304 mRNA_5936 0.41 +1.4
1,273,963 + 14304 mRNA_5936 0.42 +1.1
1,273,964 - 14304 mRNA_5936 0.42 +0.4
1,274,161 - 14304 mRNA_5936 0.47 +0.1
1,274,525 + 14304 mRNA_5936 0.56 -0.9
1,274,994 - 14304 mRNA_5936 0.68 -0.8
1,275,034 + 14304 mRNA_5936 0.69 -0.8
1,275,298 - 14304 mRNA_5936 0.75 -0.5
1,276,027 - -0.6
1,276,176 + +0.7
1,276,322 - -2.1
1,276,438 - -0.8
1,276,438 + +0.8
1,276,443 - -0.2
1,276,468 - -0.8
1,276,842 + 14305 mRNA_5937 0.15 +0.6
1,277,113 + 14305 mRNA_5937 0.40 -0.5
1,277,236 - 14305 mRNA_5937 0.52 -0.6

Or see this region's nucleotide sequence