Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6084

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14451 and 14452 are separated by 164 nucleotides14452 and 14453 are separated by 677 nucleotides mRNA_6083: 14451 - Hypothetical Protein, at 1,607,969 to 1,610,179 14451 mRNA_6084: 14452 - SUPERFAMILY--SSF54427, at 1,610,344 to 1,611,077 14452 mRNA_6085: 14453 - HMMPfam-Heparinase II/III-like protein-PF07940,SUPERFAMILY--SSF48230, at 1,611,755 to 1,615,148 14453

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,609,385 - 14451 mRNA_6083 0.64 -0.4
1,609,638 - 14451 mRNA_6083 0.75 +3.1
1,609,780 - 14451 mRNA_6083 0.82 +0.7
1,609,900 + 14451 mRNA_6083 0.87 -0.2
1,610,063 - +0.9
1,610,195 - -2.9
1,610,205 + +0.1
1,610,228 - +0.1
1,610,249 + +0.2
1,610,256 + -0.3
1,610,284 + +0.0
1,610,365 - +1.0
1,610,366 + +0.0
1,610,484 - 14452 mRNA_6084 0.19 -0.0
1,610,667 + 14452 mRNA_6084 0.44 +0.6
1,610,677 + 14452 mRNA_6084 0.45 -0.9
1,610,685 + 14452 mRNA_6084 0.46 +0.2
1,610,704 + 14452 mRNA_6084 0.49 +0.8
1,610,721 - 14452 mRNA_6084 0.51 +0.4
1,610,725 + 14452 mRNA_6084 0.52 +1.2
1,611,124 + +1.3
1,611,560 + +1.0
1,611,567 - +0.8
1,611,568 + +0.0
1,611,568 + -1.2
1,611,597 + +2.1
1,611,599 + -0.8
1,611,608 + -0.2
1,611,621 - -0.0
1,611,685 + +0.2
1,611,685 - +0.3
1,611,688 + -1.6
1,611,689 + +0.6
1,611,690 - +1.7
1,611,695 - +1.1
1,611,697 - +1.2
1,611,851 + +0.7
1,611,855 - -1.8
1,611,858 + +1.0
1,611,860 - +0.7
1,611,862 - -0.2
1,611,988 + -0.9
1,611,995 + -0.6

Or see this region's nucleotide sequence