Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6113

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14480 and 14481 are separated by 127 nucleotides14481 and 14482 are separated by 414 nucleotides mRNA_6112: 14480 - K01785 galM, GALM aldose 1-epimerase, at 17,714 to 19,844 14480 mRNA_6113: 14481 - K17263 CAND1 cullin-associated NEDD8-dissociated protein 1, at 19,972 to 24,805 14481 mRNA_6114: 14482 - Hypothetical Protein, at 25,220 to 26,095 14482

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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19,160 + 14480 mRNA_6112 0.68 +0.9
19,160 + 14480 mRNA_6112 0.68 +0.7
19,242 + 14480 mRNA_6112 0.72 +0.2
19,332 - 14480 mRNA_6112 0.76 +0.7
19,368 + 14480 mRNA_6112 0.78 -0.0
19,396 + 14480 mRNA_6112 0.79 +1.2
19,505 + 14480 mRNA_6112 0.84 -0.8
19,511 + 14480 mRNA_6112 0.84 +0.2
19,589 - 14480 mRNA_6112 0.88 +0.7
19,615 - 14480 mRNA_6112 0.89 +0.6
19,762 - +0.1
19,763 + +0.8
19,767 - +0.5
19,778 - +0.7
19,789 + +0.3
19,796 + +0.3
19,916 - -1.5
19,922 + +1.1
19,926 + +0.8
19,930 + -0.4
19,932 + +0.4
19,946 + +0.6
20,080 + +0.1
20,205 - +1.6
20,470 + 14481 mRNA_6113 0.10 +0.4
20,606 - 14481 mRNA_6113 0.13 -0.1
20,828 - 14481 mRNA_6113 0.18 +0.1
21,984 + 14481 mRNA_6113 0.42 +1.3
22,046 + 14481 mRNA_6113 0.43 +0.2
22,179 + 14481 mRNA_6113 0.46 +1.9
22,314 + 14481 mRNA_6113 0.48 -0.6
22,478 + 14481 mRNA_6113 0.52 -0.1
22,533 + 14481 mRNA_6113 0.53 +0.6
22,680 - 14481 mRNA_6113 0.56 -0.8
22,881 - 14481 mRNA_6113 0.60 +0.4
22,887 + 14481 mRNA_6113 0.60 -0.3
22,887 + 14481 mRNA_6113 0.60 -0.0
22,985 - 14481 mRNA_6113 0.62 +0.7
23,003 - 14481 mRNA_6113 0.63 +1.2
23,010 - 14481 mRNA_6113 0.63 -1.4
23,010 - 14481 mRNA_6113 0.63 +0.7
23,010 - 14481 mRNA_6113 0.63 +0.3
23,015 - 14481 mRNA_6113 0.63 -0.2
23,016 + 14481 mRNA_6113 0.63 +0.8
23,017 - 14481 mRNA_6113 0.63 +1.0
23,301 + 14481 mRNA_6113 0.69 +0.6
23,310 - 14481 mRNA_6113 0.69 -1.0
23,594 - 14481 mRNA_6113 0.75 +0.1
23,673 + 14481 mRNA_6113 0.77 -0.3
23,769 + 14481 mRNA_6113 0.79 -0.5
23,770 + 14481 mRNA_6113 0.79 +1.1
23,937 - 14481 mRNA_6113 0.82 +1.7
24,044 - 14481 mRNA_6113 0.84 +2.1
24,083 + 14481 mRNA_6113 0.85 +2.9
24,160 + 14481 mRNA_6113 0.87 +0.9
24,221 - 14481 mRNA_6113 0.88 +0.4
24,280 + 14481 mRNA_6113 0.89 +1.3
24,283 - 14481 mRNA_6113 0.89 +1.7
24,327 + -0.3
24,337 - -0.3
24,337 - +0.3
24,344 + +1.2
24,392 - +0.1
24,441 + -0.5
24,495 - -0.5
24,552 - +1.0
24,555 + +1.4
24,639 + -0.4
24,665 - +0.3
24,666 - +1.7
24,805 + -0.3
25,098 + +0.9
25,124 - +0.2
25,227 + +0.6
25,495 + 14482 mRNA_6114 0.31 +0.8
25,675 + 14482 mRNA_6114 0.52 -2.1
25,801 - 14482 mRNA_6114 0.66 +0.0

Or see this region's nucleotide sequence