Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6141

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14509 and 14510 are separated by 812 nucleotides mRNA_6141: 14509 - HMMPfam-GGL domain-PF00631,SUPERFAMILY--SSF48670, at 106,663 to 106,926 14509 mRNA_6142: 14510 - Hypothetical Protein, at 107,739 to 108,173 14510

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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105,769 - -0.9
105,791 - +0.6
105,801 - +0.2
105,818 + -0.5
105,823 + -0.2
105,825 - +1.9
105,829 - +0.6
105,830 + -0.3
105,839 - +0.8
105,841 - +0.6
105,842 + +2.1
105,850 - +1.1
105,851 + +1.2
105,851 + +0.3
105,858 + +1.0
105,867 - +1.8
105,871 - -1.7
105,882 - -0.4
105,996 + +0.8
106,003 + +0.4
106,080 - -1.1
106,316 - +0.4
106,576 + +1.8
106,722 - 14509 mRNA_6141 0.22 +1.5
106,999 - +0.1
107,009 + +0.9
107,019 + -1.7
107,025 - +0.6
107,029 - +0.5
107,034 - +0.1
107,155 + -2.6
107,166 + +0.4
107,170 + +0.7
107,171 + -0.5
107,175 - -0.1
107,296 - -1.0
107,308 + +0.8
107,310 + +0.2
107,310 - +0.9
107,320 - -0.3
107,332 - -1.1
107,333 - -0.2
107,346 - +0.1
107,359 - +0.1
107,363 + -0.2
107,371 - +0.5
107,372 - +0.0
107,375 - +1.6
107,376 + +1.2
107,390 + -1.4
107,395 + +0.4
107,488 - -0.7
107,507 + -0.6
107,523 - -0.7
107,535 - +0.1
107,535 - -0.4
107,536 + -1.2
107,542 + -0.5
107,559 + +0.1
107,574 - +0.2
107,674 - -0.2
107,691 - +0.4
107,819 - 14510 mRNA_6142 0.18 +1.2

Or see this region's nucleotide sequence