Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6180

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14547 and 14548 are separated by 112 nucleotides14548 and 14549 are separated by 456 nucleotides mRNA_6179: 14547 - KOG2101 Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s), at 187,281 to 188,756 14547 mRNA_6180: 14548 - KOG0218 Mismatch repair MSH3, at 188,869 to 192,529 14548 mRNA_6181: 14549 - K13126 PABPC polyadenylate-binding protein, at 192,986 to 195,356 14549

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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188,291 + 14547 mRNA_6179 0.68 -0.9
188,455 + 14547 mRNA_6179 0.80 +0.0
189,007 + -0.3
189,126 + +1.3
189,406 - 14548 mRNA_6180 0.15 +0.5
189,478 - 14548 mRNA_6180 0.17 +0.3
189,585 + 14548 mRNA_6180 0.20 +0.2
190,042 + 14548 mRNA_6180 0.32 -0.2
190,631 + 14548 mRNA_6180 0.48 +1.1
190,787 + 14548 mRNA_6180 0.52 -0.7
190,798 + 14548 mRNA_6180 0.53 +0.4
190,905 - 14548 mRNA_6180 0.56 +1.7
191,116 - 14548 mRNA_6180 0.61 +0.5
191,492 - 14548 mRNA_6180 0.72 -0.2
191,634 - 14548 mRNA_6180 0.76 -0.6
191,676 - 14548 mRNA_6180 0.77 -0.7
191,696 + 14548 mRNA_6180 0.77 -0.5
192,222 + -0.7
192,240 + +0.4
192,371 - -0.5
192,516 - +0.4
192,683 + +0.8
192,705 + +0.7
192,706 - +0.4
192,707 + +0.3
193,068 - -1.1

Or see this region's nucleotide sequence