Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6244

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14611 and 14612 are separated by 692 nucleotides mRNA_6243: 14611 - Hypothetical Protein, at 337,932 to 340,072 14611 mRNA_6244: 14612 - K07901 RAB8A, MEL Ras-related protein Rab-8A, at 340,765 to 342,148 14612

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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339,846 + 14611 mRNA_6243 0.89 +2.4
339,858 + 14611 mRNA_6243 0.90 +0.4
339,861 - -0.1
339,992 + +0.7
339,998 + -0.8
340,150 + +1.6
340,297 - +1.0
340,298 + +0.7
340,307 + +0.6
340,308 - +1.1
340,421 - +0.0
340,453 - +0.2
340,557 - +1.0
340,566 - -0.5
340,573 + +0.7
340,584 + -1.3
340,588 + +0.5
340,588 - +0.4
340,691 + -0.6
340,693 - -0.7
340,741 - +0.2
342,148 - +0.3
342,180 + +1.0
342,264 + +0.2
342,309 - +0.8
342,428 + +0.4
342,453 + +1.2
342,463 + -0.2
342,469 + +1.0
342,470 - +3.1
342,607 - -0.8
342,609 - +1.1
342,621 + -0.1
342,659 - +0.4
342,760 - -0.6
342,778 + +0.7
342,797 + +1.1
342,828 - -0.1
342,886 + +0.3
342,922 + +0.2
342,941 + +0.3
342,963 - -0.3
342,971 + +1.0
342,988 - -0.6

Or see this region's nucleotide sequence