Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6269

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14636 and 14637 are separated by 213 nucleotides14637 and 14638 are separated by 725 nucleotides mRNA_6268: 14636 - HMMPfam-Survival motor neuron protein (SMN)-PF06003, at 404,053 to 405,342 14636 mRNA_6269: 14637 - KOG1336 Monodehydroascorbate/ferredoxin reductase, at 405,556 to 407,019 14637 mRNA_6270: 14638 - KOG2645 Type I phosphodiesterase/nucleotide pyrophosphatase, at 407,745 to 410,533 14638

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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405,337 + +1.9
405,603 + +1.0
405,631 - +0.1
405,763 - 14637 mRNA_6269 0.14 +1.0
405,950 - 14637 mRNA_6269 0.27 -0.6
406,061 - 14637 mRNA_6269 0.34 +0.1
406,229 - 14637 mRNA_6269 0.46 -1.5
406,775 + 14637 mRNA_6269 0.83 +0.5
407,079 - -0.1
407,092 - +0.2
407,096 + +1.6
407,201 - +0.7
407,216 - -0.3
407,230 + +0.4
407,234 - +1.3
407,491 - -1.0
407,503 - +0.8
407,524 - -0.3
407,527 - +0.2
407,535 - -0.2
407,544 - +0.9
407,548 - +0.3
407,552 + -0.5
407,670 - +0.9
407,673 - +1.1
407,680 + -0.4
407,847 - +0.7
407,985 - -0.1
407,994 + +0.2
408,006 + -0.5

Or see this region's nucleotide sequence