Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6329

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14696 and 14697 are separated by 358 nucleotides14697 and 14698 are separated by 245 nucleotides mRNA_6328: 14696 - Hypothetical Protein, at 558,019 to 558,735 14696 mRNA_6329: 14697 - BLAST clp1-like protein [Moniliophthora roreri MCA 2997], at 559,094 to 560,421 14697 mRNA_6330: 14698 - K03119 tauD taurine dioxygenase, at 560,667 to 562,112 14698

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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558,096 - 14696 mRNA_6328 0.11 +1.3
558,196 - 14696 mRNA_6328 0.25 +0.4
558,339 + 14696 mRNA_6328 0.45 +0.4
558,481 + 14696 mRNA_6328 0.64 +1.0
558,626 - 14696 mRNA_6328 0.85 +0.0
558,742 - -0.3
558,750 + -1.9
558,776 - +0.5
558,890 + -0.1
559,016 - +0.1
559,125 - -0.2
559,219 - +0.2
559,226 + +0.4
559,229 - 14697 mRNA_6329 0.10 -0.4
559,349 - 14697 mRNA_6329 0.19 +0.4
559,352 - 14697 mRNA_6329 0.19 -0.1
559,369 + 14697 mRNA_6329 0.21 +0.6
559,377 - 14697 mRNA_6329 0.21 +0.6
559,383 - 14697 mRNA_6329 0.22 +1.9
559,388 - 14697 mRNA_6329 0.22 -0.8
559,390 - 14697 mRNA_6329 0.22 +0.0
559,398 - 14697 mRNA_6329 0.23 +0.7
559,401 - 14697 mRNA_6329 0.23 -1.2
559,570 + 14697 mRNA_6329 0.36 -0.1
559,599 - 14697 mRNA_6329 0.38 -0.9
559,794 - 14697 mRNA_6329 0.53 +0.8
559,819 - 14697 mRNA_6329 0.55 +1.0
559,850 + 14697 mRNA_6329 0.57 -1.2
559,968 - 14697 mRNA_6329 0.66 +0.7
560,291 - +1.1
560,413 + +1.3
560,453 + +0.7
560,464 + +0.7
560,541 + +1.2
561,135 - 14698 mRNA_6330 0.32 +0.5
561,182 - 14698 mRNA_6330 0.36 +0.4
561,184 - 14698 mRNA_6330 0.36 -0.1
561,189 - 14698 mRNA_6330 0.36 +0.2
561,311 + 14698 mRNA_6330 0.45 +1.5
561,327 - 14698 mRNA_6330 0.46 +0.7

Or see this region's nucleotide sequence