Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6362

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14729 and 14730 are separated by 559 nucleotides14730 and 14731 are separated by 66 nucleotides mRNA_6361: 14729 - K08832 SRPK3, STK23 serine/threonine-protein kinase SRPK3, at 635,268 to 638,035 14729 mRNA_6362: 14730 - SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 638,595 to 641,031 14730 mRNA_6363: 14731 - K14553 UTP18 U3 small nucleolar RNA-associated protein 18, at 641,098 to 643,745 14731

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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637,962 + +2.0
638,101 + +0.3
638,101 + +0.5
638,102 + +1.0
638,236 + +0.8
638,236 - +0.5
638,242 - +0.6
638,260 - +0.5
638,386 - -1.7
638,391 - +0.5
638,407 + +1.3
638,541 - -0.3
639,765 - 14730 mRNA_6362 0.48 +1.0
639,872 + 14730 mRNA_6362 0.52 -0.1
640,205 - 14730 mRNA_6362 0.66 -0.0
640,351 - 14730 mRNA_6362 0.72 +1.4
640,479 + 14730 mRNA_6362 0.77 +2.6
640,515 - 14730 mRNA_6362 0.79 -0.6
640,520 + 14730 mRNA_6362 0.79 -0.4
640,694 - 14730 mRNA_6362 0.86 -0.1
640,971 + -0.1

Or see this region's nucleotide sequence