Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6375

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14742 and 14743 are separated by 290 nucleotides14743 and 14744 are separated by 360 nucleotides mRNA_6374: 14742 - K20464 OSBPL5_8, ORP5_8 oxysterol-binding protein-related protein 5/8, at 663,767 to 666,324 14742 mRNA_6375: 14743 - K01178 E3.2.1.3 glucoamylase, at 666,615 to 668,807 14743 mRNA_6376: 14744 - K14811 DBP3 ATP-dependent RNA helicase DBP3, at 669,168 to 671,272 14744

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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665,763 + 14742 mRNA_6374 0.78 -0.4
665,891 - 14742 mRNA_6374 0.83 +1.2
665,899 - 14742 mRNA_6374 0.83 -0.2
665,900 - 14742 mRNA_6374 0.83 -0.5
665,910 + 14742 mRNA_6374 0.84 -0.4
665,929 - 14742 mRNA_6374 0.85 +0.5
665,939 + 14742 mRNA_6374 0.85 -0.5
666,026 - 14742 mRNA_6374 0.88 -0.4
666,042 + 14742 mRNA_6374 0.89 +0.1
666,042 + 14742 mRNA_6374 0.89 +1.4
666,045 - 14742 mRNA_6374 0.89 +0.6
666,057 - 14742 mRNA_6374 0.90 +0.5
666,068 + 14742 mRNA_6374 0.90 +0.4
666,069 + +0.9
666,070 - +2.7
666,070 - +1.2
666,072 + +2.0
666,075 + +0.3
666,174 + +0.0
666,203 - +0.3
666,204 + +0.4
666,205 + +2.5
666,208 - +1.9
666,211 - -0.0
666,215 - -0.7
666,220 + +0.3
666,243 - -1.5
666,341 - +0.3
666,349 - +0.6
666,356 + -1.2
666,392 + +0.4
666,666 - -0.1
666,979 + 14743 mRNA_6375 0.17 +0.6
667,258 - 14743 mRNA_6375 0.29 +0.1
667,264 - 14743 mRNA_6375 0.30 -2.1
667,608 + 14743 mRNA_6375 0.45 +0.2
667,758 + 14743 mRNA_6375 0.52 -3.0
667,909 - 14743 mRNA_6375 0.59 +0.8
668,192 + 14743 mRNA_6375 0.72 +1.7
668,198 - 14743 mRNA_6375 0.72 -0.7
668,634 - +0.4
668,752 + -0.2
668,789 - -0.3
668,869 - +0.6
668,918 + +1.9
668,922 - +2.3
668,930 + +0.1
668,936 - +0.9
668,965 + +0.4
668,967 + +0.8
668,998 - -0.2
669,108 + -0.1
669,110 - +2.6
669,111 - -0.5
669,111 - +1.5
669,116 + +0.7
669,119 - -0.5
669,120 + -1.0
669,124 - -1.2
669,125 - -0.6
669,126 - -1.3
669,133 - -1.4
669,134 + +0.2
669,137 + +1.2
669,146 - +1.4
669,274 + +2.7
669,287 + +0.8
669,295 - +3.5
669,302 - +1.2
669,391 + 14744 mRNA_6376 0.11 +0.5
669,564 - 14744 mRNA_6376 0.19 +0.6
669,710 - 14744 mRNA_6376 0.26 -0.7

Or see this region's nucleotide sequence