Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6393

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14760 and 14761 are separated by 219 nucleotides14761 and 14762 are separated by 500 nucleotides mRNA_6392: 14760 - KOG4533 Uncharacterized conserved protein, at 704,609 to 706,220 14760 mRNA_6393: 14761 - KOG3823 Uncharacterized conserved protein, at 706,440 to 709,966 14761 mRNA_6394: 14762 - HMMPfam-Asparagine synthase-PF00733,SUPERFAMILY--SSF52402,SUPERFAMILY--SSF56235, at 710,467 to 712,891 14762

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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705,728 + 14760 mRNA_6392 0.69 +0.7
705,887 + 14760 mRNA_6392 0.79 +0.6
705,901 - 14760 mRNA_6392 0.80 -0.4
705,904 + 14760 mRNA_6392 0.80 +1.0
705,908 - 14760 mRNA_6392 0.81 +0.4
705,950 + 14760 mRNA_6392 0.83 +0.3
706,022 + 14760 mRNA_6392 0.88 +0.3
706,073 - +1.1
706,116 + -0.1
706,224 + -0.3
706,348 - +0.0
706,349 - -0.0
706,354 - +0.1
706,366 + +0.1
706,375 - -1.7
706,380 - -1.0
706,381 + +0.4
706,381 + +0.5
706,383 + -0.2
706,392 + -0.1
706,417 - +0.8
706,434 + +1.3
706,676 + +0.5
706,683 + +0.0
706,961 + 14761 mRNA_6393 0.15 -0.7
706,963 - 14761 mRNA_6393 0.15 +0.5
706,965 + 14761 mRNA_6393 0.15 -1.4
707,098 + 14761 mRNA_6393 0.19 -0.3
707,394 - 14761 mRNA_6393 0.27 +0.3
707,398 + 14761 mRNA_6393 0.27 +0.6
707,483 + 14761 mRNA_6393 0.30 -1.2
707,549 - 14761 mRNA_6393 0.31 +1.4
707,847 - 14761 mRNA_6393 0.40 +1.6
708,018 - 14761 mRNA_6393 0.45 +0.7
708,136 - 14761 mRNA_6393 0.48 +0.2
708,308 + 14761 mRNA_6393 0.53 +1.2
708,405 + 14761 mRNA_6393 0.56 +0.8
708,405 + 14761 mRNA_6393 0.56 -0.1
708,479 + 14761 mRNA_6393 0.58 +1.8
708,602 + 14761 mRNA_6393 0.61 +0.3
708,680 - 14761 mRNA_6393 0.64 +0.1
708,704 + 14761 mRNA_6393 0.64 -0.9
709,159 - 14761 mRNA_6393 0.77 -0.7
709,167 + 14761 mRNA_6393 0.77 -0.3
709,491 - 14761 mRNA_6393 0.87 -0.4
709,496 + 14761 mRNA_6393 0.87 -0.9
709,776 + +0.2
709,800 - +0.5
710,025 - -0.3
710,148 - +1.0
710,178 - +0.3
710,178 + +0.6
710,189 - +0.5
710,201 + -0.0
710,231 - +1.2
710,373 + -0.2
710,504 - +1.8
710,608 - +1.8
710,633 + -0.4
710,635 + -0.5
710,640 - -1.1
710,738 + 14762 mRNA_6394 0.11 +1.1
710,800 - 14762 mRNA_6394 0.14 +0.8
710,854 + 14762 mRNA_6394 0.16 -0.9
710,921 - 14762 mRNA_6394 0.19 +1.2
710,922 + 14762 mRNA_6394 0.19 -1.7
710,933 + 14762 mRNA_6394 0.19 -0.3
710,934 - 14762 mRNA_6394 0.19 +1.7

Or see this region's nucleotide sequence