Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6398

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14765 and 14766 are separated by 447 nucleotides14766 and 14767 are separated by 1 nucleotides mRNA_6397: 14765 - K02976 RP-S26e, RPS26 small subunit ribosomal protein S26e, at 719,574 to 720,317 14765 mRNA_6398: 14766 - K14556 DIP2, UTP12, WDR3 U3 small nucleolar RNA-associated protein 12, at 720,765 to 724,339 14766 mRNA_6399: 14767 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959, at 724,341 to 725,780 14767

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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720,524 - +1.0
720,664 - +0.8
724,204 + +0.2
724,382 - +0.4
724,562 + 14767 mRNA_6399 0.15 -0.7
724,786 - 14767 mRNA_6399 0.31 -0.1
724,939 + 14767 mRNA_6399 0.42 +0.0
724,946 + 14767 mRNA_6399 0.42 -0.6
725,096 - 14767 mRNA_6399 0.52 -0.2
725,102 + 14767 mRNA_6399 0.53 +0.3

Or see this region's nucleotide sequence