Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6525

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14892 and 14893 are separated by 282 nucleotides14893 and 14894 are separated by 965 nucleotides mRNA_6524: 14892 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 999,531 to 1,001,982 14892 mRNA_6525: 14893 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-LIS1 homology (LisH) motif profile.-PS50896,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,002,265 to 1,003,923 14893 mRNA_6526: 14894 - KOG2929 Transcription factor, component of CCR4 transcriptional complex, at 1,004,889 to 1,006,380 14894

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,001,523 + 14892 mRNA_6524 0.81 -1.5
1,001,624 - 14892 mRNA_6524 0.85 -0.5
1,002,218 + -1.5
1,002,342 - -0.8
1,002,503 + 14893 mRNA_6525 0.14 +0.6
1,002,504 - 14893 mRNA_6525 0.14 +0.1
1,002,534 + 14893 mRNA_6525 0.16 +0.5
1,003,068 + 14893 mRNA_6525 0.48 +0.7
1,003,520 + 14893 mRNA_6525 0.76 +0.9
1,004,076 - -0.0
1,004,497 + +0.8
1,004,830 - +0.2
1,004,841 - +0.9
1,004,861 - +1.8

Or see this region's nucleotide sequence