Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6530

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14898 and 14899 are separated by 379 nucleotides mRNA_6530: 14898 - K03809 wrbA NAD(P)H dehydrogenase (quinone), at 1,010,809 to 1,011,597 14898 mRNA_6531: 14899 - K19940 SEC2 Rab guanine nucleotide exchange factor SEC2, at 1,011,977 to 1,014,833 14899

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,010,031 + -0.3
1,010,473 - -1.3
1,011,044 + 14898 mRNA_6530 0.30 +0.6
1,011,180 - 14898 mRNA_6530 0.47 -0.2
1,011,331 + 14898 mRNA_6530 0.66 -0.8
1,011,370 + 14898 mRNA_6530 0.71 +1.0
1,011,624 - -1.4
1,011,625 + +0.0
1,011,635 - -1.0
1,011,636 + +0.5
1,011,638 + +0.7
1,011,648 + +0.3
1,011,656 + -0.7
1,011,771 - +1.2
1,011,825 - -0.4
1,012,076 - +2.0
1,012,078 - +0.6
1,012,081 - +0.7
1,012,092 + +0.0
1,012,094 - +0.7
1,012,095 + +1.0
1,012,101 + -0.3
1,012,111 - -0.4
1,012,111 - -0.5
1,012,117 + +0.5
1,012,123 - -0.5
1,012,126 + +0.9
1,012,131 + +0.4
1,012,131 + +1.5
1,012,146 - +0.6
1,012,147 - +2.7
1,012,157 - -0.5
1,012,227 + +0.0
1,012,265 - 14899 mRNA_6531 0.10 -0.2
1,012,268 + 14899 mRNA_6531 0.10 +0.9
1,012,406 - 14899 mRNA_6531 0.15 -1.1
1,012,530 - 14899 mRNA_6531 0.19 -0.3
1,012,534 - 14899 mRNA_6531 0.19 -0.3

Or see this region's nucleotide sequence