Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6645

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15013 and 15014 are separated by 358 nucleotides mRNA_6645: 15013 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 1,335,554 to 1,337,313 15013 mRNA_6646: 15014 - K14647 vpr minor extracellular serine protease Vpr, at 1,337,672 to 1,341,391 15014

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,334,556 - +0.2
1,334,573 - -2.1
1,334,574 + +0.6
1,334,574 + -1.8
1,334,579 - +0.7
1,334,585 - -0.0
1,334,588 + +0.9
1,334,590 - +2.0
1,334,592 + +0.2
1,334,593 - +0.6
1,334,612 + -0.4
1,334,614 - -0.9
1,334,615 - -0.9
1,334,623 + +0.1
1,334,623 - +1.3
1,334,654 - +0.7
1,334,655 - +1.2
1,334,672 - +0.2
1,334,676 - +1.2
1,334,681 - -0.1
1,334,687 - -0.7
1,334,690 - +2.0
1,334,691 + -0.6
1,334,700 + +0.1
1,334,701 - -0.1
1,334,702 + -0.2
1,334,712 - +1.1
1,334,712 - -0.1
1,334,714 - +2.2
1,334,726 - -0.1
1,334,731 - +0.4
1,334,757 - -0.5
1,334,760 - +0.5
1,334,764 + -1.5
1,334,773 + +1.9
1,334,784 + -0.3
1,334,792 + +0.7
1,334,820 + -1.0
1,334,822 - -0.8
1,334,827 + +0.6
1,334,838 + -1.7
1,334,856 - -0.5
1,334,875 + -0.4
1,334,882 - +0.9
1,334,885 - +0.4
1,334,898 - -1.5
1,334,915 - +0.5
1,334,915 + +0.1
1,334,920 + +1.5
1,334,924 + +0.0
1,334,932 - +1.3
1,334,959 - -0.9
1,334,961 + -0.3
1,334,974 - +0.1
1,334,975 - -0.4
1,334,976 + +0.1
1,334,976 - +0.8
1,334,981 - -0.3
1,334,989 - -0.7
1,334,993 - +3.0
1,334,996 + +2.1
1,334,996 + +2.2
1,335,007 + -0.7
1,335,008 - +0.5
1,335,012 + +0.1
1,335,014 + +0.6
1,335,015 + -0.3
1,335,018 + +0.1
1,335,019 - +0.1
1,335,026 + +0.5
1,335,030 + +0.1
1,335,030 - +1.4
1,335,033 + +1.4
1,335,036 + +0.9
1,335,047 - -0.1
1,335,066 + -0.6
1,335,103 + -0.3
1,335,103 + +2.8
1,335,107 + -0.2
1,335,114 + +0.2
1,335,114 + -0.1
1,335,114 + +0.1
1,335,119 - +0.2
1,335,127 - +0.8
1,335,134 - +0.8
1,335,147 - +1.2
1,335,148 + -0.1
1,335,153 - -2.5
1,335,153 - +0.4
1,335,154 + -1.0
1,335,156 + -0.8
1,335,157 - +0.8
1,335,158 - +2.4
1,335,161 + +0.8
1,335,166 - -0.0
1,335,167 + +0.2
1,335,177 - +0.3
1,335,179 + -0.2
1,335,181 - +0.1
1,335,182 + +0.7
1,335,182 - -0.1
1,335,184 - -1.3
1,335,189 + +0.7
1,335,193 - +0.2
1,335,196 + +0.6
1,335,197 - +0.9
1,335,214 + -0.4
1,335,251 - -0.3
1,335,256 + +0.8
1,335,260 + -0.1
1,335,260 + -0.9
1,335,267 - +0.4
1,335,274 + -1.3
1,335,280 + +1.1
1,335,293 + +1.0
1,335,296 + -0.5
1,335,305 - +0.5
1,335,309 - +1.8
1,335,317 - +0.6
1,335,317 - -0.7
1,335,322 + -0.8
1,335,336 + +0.6
1,335,336 + +1.4
1,335,336 + +0.8
1,335,336 + +0.8
1,335,346 + +2.3
1,335,383 + -0.0
1,335,471 - -1.3
1,335,477 + +2.3
1,335,668 - -1.3
1,335,669 + -0.5
1,335,779 - 15013 mRNA_6645 0.13 +1.8
1,336,071 + 15013 mRNA_6645 0.29 -0.7
1,336,180 - 15013 mRNA_6645 0.36 -0.8
1,336,198 + 15013 mRNA_6645 0.37 -0.6
1,336,214 - 15013 mRNA_6645 0.38 +0.2
1,336,367 + 15013 mRNA_6645 0.46 -1.2
1,336,371 + 15013 mRNA_6645 0.46 +1.7
1,336,476 - 15013 mRNA_6645 0.52 +0.3
1,337,066 - 15013 mRNA_6645 0.86 -0.4
1,337,100 + 15013 mRNA_6645 0.88 +0.3
1,337,179 + -0.1
1,337,225 + -0.7
1,337,500 + -1.0
1,337,509 + +1.3
1,337,545 - +0.2
1,337,553 + -0.5
1,337,636 + +0.4
1,337,812 + -0.3
1,337,954 + -0.2
1,338,256 - 15014 mRNA_6646 0.16 +2.1

Or see this region's nucleotide sequence