Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6653

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15021 and 15022 are separated by 278 nucleotides mRNA_6653: 15021 - K04739 PRKAR cAMP-dependent protein kinase regulator, at 1,354,178 to 1,355,889 15021 mRNA_6654: 15022 - K12462 ARHGDI, RHOGDI Rho GDP-dissociation inhibitor, at 1,356,168 to 1,357,307 15022

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,353,179 + +1.2
1,353,183 - -0.3
1,353,185 - +0.1
1,353,191 + -0.6
1,353,196 + +0.7
1,353,342 - +0.2
1,353,381 + -0.4
1,353,388 - +2.8
1,353,389 - +0.2
1,353,438 + -1.6
1,353,457 - -0.1
1,353,465 - +0.3
1,353,466 + -0.0
1,353,470 - -0.4
1,353,473 - +0.8
1,353,474 + -0.5
1,353,474 - -1.3
1,353,474 - -0.7
1,353,481 - +0.4
1,353,483 - +0.4
1,353,483 + -0.0
1,353,497 + -0.4
1,353,510 + +1.9
1,353,512 + +0.1
1,353,522 - -0.8
1,353,525 + +2.2
1,353,634 + +0.3
1,353,639 + +0.2
1,353,665 - -0.2
1,353,777 - +0.8
1,353,800 + +0.3
1,353,810 + +1.9
1,353,960 - -1.1
1,355,421 + 15021 mRNA_6653 0.73 +0.1
1,355,734 + +0.3
1,356,134 - +1.9

Or see this region's nucleotide sequence