Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6705

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15072 and 15073 are separated by 260 nucleotides mRNA_6704: 15072 - HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891, at 1,490,466 to 1,492,340 15072 mRNA_6705: 15073 - K11227 PBS2 mitogen-activated protein kinase kinase, at 1,492,601 to 1,495,154 15073

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
1,491,695 - 15072 mRNA_6704 0.66 -0.4
1,491,712 + 15072 mRNA_6704 0.66 -0.7
1,491,822 - 15072 mRNA_6704 0.72 -1.3
1,491,852 + 15072 mRNA_6704 0.74 -1.0
1,491,978 - 15072 mRNA_6704 0.81 +2.1
1,491,982 - 15072 mRNA_6704 0.81 +0.4
1,491,986 + 15072 mRNA_6704 0.81 +0.2
1,491,988 - 15072 mRNA_6704 0.81 -0.4
1,492,022 - 15072 mRNA_6704 0.83 +1.5
1,492,023 + 15072 mRNA_6704 0.83 +1.9
1,492,126 - 15072 mRNA_6704 0.89 -0.6
1,492,235 + -0.0
1,492,300 - +1.2
1,492,308 + +0.2
1,492,372 + -0.3
1,492,426 + +0.1
1,492,578 - +1.6
1,492,581 - +0.1
1,492,598 + +0.6
1,492,614 + -2.3
1,493,422 + 15073 mRNA_6705 0.32 -3.5
1,495,003 - -1.1
1,495,176 + -1.7
1,495,189 - +0.8
1,495,197 + -0.1
1,495,219 + -1.0
1,495,219 + +1.3
1,495,235 + +1.2
1,495,303 - +1.4
1,495,339 + +0.6
1,495,350 + +0.8
1,495,354 - +3.1
1,495,367 - +0.0
1,495,439 + +0.7
1,495,446 + -0.8
1,495,457 - +0.6
1,495,458 - -0.3
1,495,472 - +0.8
1,495,510 - +0.9
1,495,512 - -0.5
1,495,515 + +0.1
1,495,517 + -1.1
1,495,531 - -0.2
1,495,536 - -1.6
1,495,538 + +2.3
1,495,543 + +0.7
1,495,551 - -0.9
1,495,564 - +1.1
1,495,566 - -0.1
1,495,568 - +0.1
1,495,588 - +1.7
1,495,593 - +0.3
1,495,602 - -2.1
1,495,604 + -0.6
1,495,624 - -1.7
1,495,632 + -0.2
1,495,639 - +0.4
1,495,727 - +0.2
1,495,786 - -1.0
1,495,791 - +0.8
1,495,794 + -0.9
1,495,799 - -0.5
1,495,842 - -1.3
1,495,941 - -0.3
1,495,945 - +0.4
1,496,010 - +1.1
1,496,013 - -0.6
1,496,017 - -1.1
1,496,041 + +0.2
1,496,058 + -0.6
1,496,059 - -0.1
1,496,083 - -0.3
1,496,099 - +0.3
1,496,104 - -1.9

Or see this region's nucleotide sequence