Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6767

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15134 and 15135 are separated by 123 nucleotides15135 and 15136 are separated by 180 nucleotides mRNA_6766: 15134 - HMMPfam-PIG-X / PBN1-PF08320,SMART-PIG-X / PBN1-SM00780, at 88,175 to 88,997 15134 mRNA_6767: 15135 - KOG0393 Ras-related small GTPase, Rho type, at 89,121 to 90,132 15135 mRNA_6768: 15136 - HMMPfam-DNA repair protein endonuclease SAE2/CtIP C-terminus-PF08573, at 90,313 to 94,205 15136

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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88,136 - -0.6
88,151 + +0.5
88,168 + -3.1
90,222 + +0.2
90,236 - -0.1
90,249 + +0.6
90,251 + -0.1
90,389 - +0.0
90,401 + +0.8
90,550 + +0.6
90,963 + 15136 mRNA_6768 0.17 +0.1

Or see this region's nucleotide sequence