Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6866

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15233 and 15234 are separated by 296 nucleotides15234 and 15235 are separated by 130 nucleotides mRNA_6865: 15233 - HMMPfam-Spc24 subunit of Ndc80-PF08286,SUPERFAMILY--SSF143026, at 308,236 to 309,069 15233 mRNA_6866: 15234 - Hypothetical Protein, at 309,366 to 310,327 15234 mRNA_6867: 15235 - KOG4121 Nuclear pore complex, Nup133 component (sc Nup133), at 310,458 to 312,954 15235

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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309,141 - -1.0
309,277 - -0.8
309,278 - -0.1
309,308 + +0.8
309,394 - -0.3
309,427 - -0.3
309,434 - -1.3
309,459 - +1.8
309,541 - 15234 mRNA_6866 0.18 +0.6
309,727 + 15234 mRNA_6866 0.38 +1.9
309,733 + 15234 mRNA_6866 0.38 +0.8
309,762 + 15234 mRNA_6866 0.41 +2.6
309,770 - 15234 mRNA_6866 0.42 +0.4
309,868 + 15234 mRNA_6866 0.52 +2.3
309,916 + 15234 mRNA_6866 0.57 +0.1
309,916 - 15234 mRNA_6866 0.57 +0.3
310,030 + 15234 mRNA_6866 0.69 +3.1
310,151 - 15234 mRNA_6866 0.82 -0.0
310,158 + 15234 mRNA_6866 0.82 -0.8
310,637 + +0.3
310,785 - 15235 mRNA_6867 0.13 +1.0

Or see this region's nucleotide sequence