Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6870

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15237 and 15238 are separated by 47 nucleotides15238 and 15239 are separated by 179 nucleotides mRNA_6869: 15237 - K06125 COQ2 4-hydroxybenzoate polyprenyltransferase, at 314,323 to 315,416 15237 mRNA_6870: 15238 - K08736 MSH3 DNA mismatch repair protein MSH3, at 315,464 to 319,765 15238 mRNA_6871: 15239 - K17600 VPS54 vacuolar protein sorting-associated protein 54, at 319,945 to 325,501 15239

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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315,468 - +2.1
315,627 + -0.1
315,750 + +0.3
315,810 + +0.7
315,919 + 15238 mRNA_6870 0.11 -0.3
316,067 - 15238 mRNA_6870 0.14 +2.5
316,253 + 15238 mRNA_6870 0.18 +1.3
316,473 + 15238 mRNA_6870 0.23 +0.9
316,476 + 15238 mRNA_6870 0.24 +0.5
316,590 + 15238 mRNA_6870 0.26 +0.3
316,630 + 15238 mRNA_6870 0.27 +0.3
316,712 + 15238 mRNA_6870 0.29 +0.8
316,903 + 15238 mRNA_6870 0.33 +1.1
316,990 + 15238 mRNA_6870 0.35 -1.5
317,046 - 15238 mRNA_6870 0.37 +2.0
317,145 - 15238 mRNA_6870 0.39 +1.0
317,151 + 15238 mRNA_6870 0.39 +0.6
317,184 - 15238 mRNA_6870 0.40 -0.7
317,214 - 15238 mRNA_6870 0.41 -0.2
317,313 + 15238 mRNA_6870 0.43 +1.9
317,709 + 15238 mRNA_6870 0.52 +0.5
317,997 - 15238 mRNA_6870 0.59 -1.7
318,359 + 15238 mRNA_6870 0.67 -0.2
318,763 - 15238 mRNA_6870 0.77 +0.9
318,767 + 15238 mRNA_6870 0.77 +0.8
318,906 + 15238 mRNA_6870 0.80 -1.7
319,062 - 15238 mRNA_6870 0.84 +2.0
319,068 + 15238 mRNA_6870 0.84 -0.2
319,527 - +0.4
319,665 - -0.3
319,807 - +1.4
319,809 - -0.2
320,246 + +1.2

Or see this region's nucleotide sequence