Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6901

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15268 and 15269 are separated by 290 nucleotides15269 and 15270 are separated by 124 nucleotides mRNA_6900: 15268 - KOG0254 Predicted transporter (major facilitator superfamily), at 387,700 to 389,910 15268 mRNA_6901: 15269 - HMMPfam-DASH complex subunit Dad2-PF08654, at 390,201 to 390,814 15269 mRNA_6902: 15270 - HMMPfam-Fungal family of unknown function (DUF1776)-PF08643,SUPERFAMILY--SSF51735, at 390,939 to 393,309 15270

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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389,274 + 15268 mRNA_6900 0.71 +0.4
389,583 + 15268 mRNA_6900 0.85 +0.0
390,042 - +2.0
390,132 - +3.0
390,446 - 15269 mRNA_6901 0.40 +1.0
390,898 + +1.3
391,043 + -0.6
391,048 - +0.1
391,230 - 15270 mRNA_6902 0.12 +1.8
391,309 - 15270 mRNA_6902 0.16 -1.0
391,328 - 15270 mRNA_6902 0.16 -0.8
391,484 + 15270 mRNA_6902 0.23 -0.4
391,807 + 15270 mRNA_6902 0.37 -0.6

Or see this region's nucleotide sequence