Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6908

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15275 and 15276 are separated by 570 nucleotides15276 and 15277 are separated by 231 nucleotides mRNA_6907: 15275 - K14016 UFD1 ubiquitin fusion degradation protein 1, at 403,238 to 404,908 15275 mRNA_6908: 15276 - K01907 AACS, acsA acetoacetyl-CoA synthetase, at 405,479 to 408,297 15276 mRNA_6909: 15277 - K14315 NDC1, TMEM48 nucleoporin NDC1, at 408,529 to 411,391 15277

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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405,288 + -0.3
405,310 + +1.2
405,310 - -2.3
405,319 + -2.6
405,327 - +1.2
405,341 + -1.1
405,355 - -0.7
405,448 - +2.0
405,452 - -0.1
405,486 - -1.8
405,494 + +0.5
405,738 - +1.1
405,739 + -2.0
406,063 - 15276 mRNA_6908 0.21 +0.8
406,328 + 15276 mRNA_6908 0.30 +1.1
406,418 - 15276 mRNA_6908 0.33 -0.2
406,439 - 15276 mRNA_6908 0.34 -0.2
406,765 - 15276 mRNA_6908 0.46 -0.4
406,795 + 15276 mRNA_6908 0.47 +0.4
406,911 - 15276 mRNA_6908 0.51 +0.2
407,038 - 15276 mRNA_6908 0.55 +0.3
407,058 + 15276 mRNA_6908 0.56 +0.2
407,104 - 15276 mRNA_6908 0.58 -0.9
407,329 - 15276 mRNA_6908 0.66 -1.7
407,372 - 15276 mRNA_6908 0.67 +0.9
407,506 - 15276 mRNA_6908 0.72 -0.3
407,514 - 15276 mRNA_6908 0.72 +0.1
407,652 + 15276 mRNA_6908 0.77 -1.6
407,803 + 15276 mRNA_6908 0.82 -0.5
408,090 + +0.5
408,206 + +0.0
408,207 - +1.9
408,217 - +3.0
408,223 + +1.1
408,361 - +0.3
408,365 - -0.7
408,366 - +0.4
408,377 - +0.8
408,412 + +2.1
408,413 - +0.6
408,417 - -0.5
408,420 + -0.2
408,420 - +0.7
408,420 - +1.8
408,421 + +0.3
408,455 - -0.9
408,468 + -1.2
408,484 + +0.8
408,489 - +0.4
408,509 - -1.9
408,835 - 15277 mRNA_6909 0.11 +0.0

Or see this region's nucleotide sequence