Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6931

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15298 and 15299 are separated by 508 nucleotides15299 and 15300 are separated by 200 nucleotides mRNA_6930: 15298 - Hypothetical Protein, at 461,530 to 462,565 15298 mRNA_6931: 15299 - KOG4844 Mitochondrial ribosomal protein S27, at 463,074 to 463,703 15299 mRNA_6932: 15300 - K00764 purF, PPAT amidophosphoribosyltransferase, at 463,904 to 466,074 15300

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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462,170 + 15298 mRNA_6930 0.62 +0.1
462,200 - 15298 mRNA_6930 0.65 +1.6
462,271 - 15298 mRNA_6930 0.72 +0.3
462,323 - 15298 mRNA_6930 0.77 +0.2
462,327 + 15298 mRNA_6930 0.77 -0.2
462,353 + 15298 mRNA_6930 0.79 -1.3
462,608 - -0.4
462,609 + +0.7
462,609 - +0.4
462,611 + -0.1
462,646 + -0.9
462,718 - +0.5
462,779 + +0.3
462,881 - -0.2
462,900 - -0.0
463,761 + +0.0
463,781 + -0.5

Or see this region's nucleotide sequence