Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6983

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15350 and 15351 are separated by 399 nucleotides15351 and 15352 are separated by 226 nucleotides mRNA_6982: 15350 - K11497 CENPC centromere protein C, at 593,705 to 596,436 15350 mRNA_6983: 15351 - K02145 ATPeV1A, ATP6A V-type H+-transporting ATPase subunit A, at 596,836 to 599,468 15351 mRNA_6984: 15352 - HMMPfam-Fungal specific transcription factor domain-PF04082, at 599,695 to 602,665 15352

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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596,454 + +0.4
596,463 - +1.4
596,464 - -0.1
596,496 - +0.0
596,496 + -0.1
596,501 - +2.6
596,513 + -1.0
596,531 + +0.0
596,589 - +0.5
596,620 - +1.5
596,696 - +2.3
596,704 - +0.2
596,715 + -0.6
596,861 + -1.8
599,491 - +0.1
599,582 + +0.5
599,865 + -0.3
599,883 - +1.0
600,335 + 15352 mRNA_6984 0.22 +0.5

Or see this region's nucleotide sequence