Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7022

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15389 and 15390 are separated by 282 nucleotides15390 and 15391 are separated by 200 nucleotides mRNA_7021: 15389 - K21027 TRMU, SLM3 tRNA-5-taurinomethyluridine 2-sulfurtransferase, at 692,794 to 694,459 15389 mRNA_7022: 15390 - KOG0758 Mitochondrial carnitine-acylcarnitine carrier protein, at 694,742 to 696,268 15390 mRNA_7023: 15391 - Interpro RNA polymerase I-specific transcription-initiation factor, at 696,469 to 700,104 15391

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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694,769 + +0.5
694,890 - +1.5
695,063 - 15390 mRNA_7022 0.21 +0.0
695,163 + 15390 mRNA_7022 0.28 +0.6
695,180 - 15390 mRNA_7022 0.29 +0.1
695,194 + 15390 mRNA_7022 0.30 +0.7
695,323 + 15390 mRNA_7022 0.38 -0.4
695,635 - 15390 mRNA_7022 0.58 +0.2
695,902 - 15390 mRNA_7022 0.76 +1.2
695,928 - 15390 mRNA_7022 0.78 +0.9
695,929 - 15390 mRNA_7022 0.78 -0.2
695,932 + 15390 mRNA_7022 0.78 +1.4
695,937 + 15390 mRNA_7022 0.78 +2.2
695,942 - 15390 mRNA_7022 0.79 +0.3
696,053 - 15390 mRNA_7022 0.86 -0.3
696,076 - 15390 mRNA_7022 0.87 +1.1
696,077 + 15390 mRNA_7022 0.87 -1.1
696,080 - 15390 mRNA_7022 0.88 +0.9
696,082 + 15390 mRNA_7022 0.88 -1.3
696,082 - 15390 mRNA_7022 0.88 +0.5
696,230 + -0.2
696,357 - -0.0
696,359 + -0.8
696,363 - +0.6
696,367 - +0.5
696,387 - +0.3
696,533 - +1.9
696,681 + +0.8

Or see this region's nucleotide sequence