Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7052

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15419 and 15420 are separated by 393 nucleotides15420 and 15421 are separated by 286 nucleotides mRNA_7051: 15419 - HMMPfam-Translation initiation factor eIF3 subunit-PF08597, at 763,063 to 764,121 15419 mRNA_7052: 15420 - K01624 FBA, fbaA fructose-bisphosphate aldolase, class II, at 764,515 to 766,298 15420 mRNA_7053: 15421 - K01192 E3.2.1.25, MANBA, manB beta-mannosidase, at 766,585 to 770,373 15421

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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764,129 - +1.1
764,165 - +0.9
764,270 + -0.0
764,292 - +0.8
764,306 + +1.1
764,404 - +0.2
764,419 - -0.6
764,427 + -0.2
764,430 + +0.6
764,433 + +0.3
764,434 - -0.2
764,435 - +1.2
764,436 - -0.5
764,442 - +0.3
764,445 + -0.4
764,453 - +0.2
764,453 - +1.4
764,458 - -0.4
764,465 + +0.8
764,465 + +1.0
764,470 + -0.7
764,472 + -0.3
766,366 - +1.5
766,370 + +0.4
766,409 - +2.7
766,542 - -1.0
766,687 + -0.9
766,687 - +2.4
766,692 + +1.1
767,118 - 15421 mRNA_7053 0.14 -0.0
767,133 + 15421 mRNA_7053 0.14 +0.7
767,218 + 15421 mRNA_7053 0.17 +0.3
767,249 - 15421 mRNA_7053 0.18 +0.3

Or see this region's nucleotide sequence