Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7056

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15423 and 15424 are separated by 521 nucleotides15424 and 15425 are separated by 313 nucleotides mRNA_7055: 15423 - K03841 FBP, fbp fructose-1,6-bisphosphatase I, at 774,217 to 775,850 15423 mRNA_7056: 15424 - K01557 FAHD1 acylpyruvate hydrolase, at 776,372 to 777,538 15424 mRNA_7057: 15425 - K15634 gpmB probable phosphoglycerate mutase, at 777,852 to 778,935 15425

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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775,416 - 15423 mRNA_7055 0.73 -1.3
775,446 + 15423 mRNA_7055 0.75 +0.6
775,575 - 15423 mRNA_7055 0.83 -0.2
775,636 + 15423 mRNA_7055 0.87 +0.2
775,704 + +0.7
775,708 - -0.4
775,726 + -0.3
775,734 - +0.2
775,738 - -1.4
775,739 + +1.2
775,739 - +2.2
775,740 + -0.6
775,746 + +0.3
775,749 + +0.6
775,846 - +2.3
775,861 + +0.6
775,903 - +1.1
776,013 - +1.3
776,026 - +0.1
776,028 - -0.4
776,032 + +0.7
776,034 - +1.8
776,043 - +0.3
776,043 + -0.5
776,047 - -0.6
776,050 - +2.2
776,051 - +0.1
776,053 - +0.0
776,057 + +0.8
776,058 + +1.6
776,062 - +2.1
776,064 - -0.4
776,077 + +0.5
776,124 - -0.1
776,125 - -1.4
776,132 - +0.4
776,132 - +1.5
776,147 + +1.0
776,149 - +1.2
776,168 + +1.2
776,179 - +0.3
776,208 + +1.0
776,298 - +0.1
776,305 + -0.7
776,307 + +0.5
776,324 - -2.3
776,442 + +3.0
776,445 - -0.8
776,763 + 15424 mRNA_7056 0.34 -0.1
777,042 + 15424 mRNA_7056 0.57 +0.1
777,050 - 15424 mRNA_7056 0.58 +0.1
777,196 + 15424 mRNA_7056 0.71 +0.6
777,311 - 15424 mRNA_7056 0.80 +2.1
777,608 + +0.3
777,610 + +0.4
777,661 + -0.0
777,769 - +1.3
777,795 + -1.0
777,889 - -0.0
777,918 - +1.0
777,923 + +0.5
778,028 - 15425 mRNA_7057 0.16 -0.5
778,039 - 15425 mRNA_7057 0.17 +0.1
778,059 - 15425 mRNA_7057 0.19 +0.7
778,068 - 15425 mRNA_7057 0.20 -0.4
778,368 - 15425 mRNA_7057 0.48 -0.1
778,393 + 15425 mRNA_7057 0.50 +1.0

Or see this region's nucleotide sequence