Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7073

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15440 and 15441 are separated by 595 nucleotides mRNA_7072: 15440 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 815,614 to 818,476 15440 mRNA_7073: 15441 - HMMPfam-Domain of unknown function DUF77-PF01910,SUPERFAMILY--SSF89957,TIGRFAM-TIGR00106 uncharacterized protein, MTH1187 family-TIGR00106, at 819,072 to 820,252 15441

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
818,269 + +1.7
818,301 - -0.3
818,403 + +1.4
818,587 - +0.5
818,589 - -1.0
818,640 - +0.4
818,733 - +0.3
818,739 + -0.5
818,742 + -0.6
818,757 - +1.6
818,779 - +0.2
818,788 + +2.6
818,802 + +0.1
818,811 - +0.9
818,891 - -0.1
818,982 - +0.4
819,028 - -2.0
819,029 - +2.8
819,032 + -0.1
819,039 + -0.1
819,042 + +1.1
819,451 + 15441 mRNA_7073 0.32 +1.1
819,761 - 15441 mRNA_7073 0.58 +0.7
820,057 - 15441 mRNA_7073 0.83 +0.4
820,067 + 15441 mRNA_7073 0.84 -0.6
820,353 + +0.4
820,652 - +0.9
820,839 - -2.1

Or see this region's nucleotide sequence