Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7109

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15476 and 15477 are separated by 323 nucleotides15477 and 15478 are separated by 370 nucleotides mRNA_7108: 15476 - HMMPfam-Arrestin (or S-antigen), C-terminal domain-PF02752,SMART-Arrestin (or S-antigen), C-terminal domain-SM01017,SUPERFAMILY--SSF81296, at 899,228 to 903,559 15476 mRNA_7109: 15477 - HMMPfam-C2 domain-PF00168,ProSiteProfiles-C2 domain profile.-PS50004,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 903,883 to 906,158 15477 mRNA_7110: 15478 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SMART-Enoylreductase-SM00829,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 906,529 to 908,168 15478

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
903,092 + 15476 mRNA_7108 0.89 +2.4
903,105 + 15476 mRNA_7108 0.89 -0.0
903,248 - +0.3
903,294 + -0.1
903,390 + -0.5
903,408 - -0.9
903,427 + -1.5
903,429 + +2.5
903,690 + +0.3
903,721 - +1.1
903,723 + +0.5
903,745 + +0.3
903,894 - +0.4
903,902 + +0.0
904,066 - +0.3
904,505 - 15477 mRNA_7109 0.27 +1.3
905,179 - 15477 mRNA_7109 0.57 -0.5
905,322 + 15477 mRNA_7109 0.63 +0.1
905,528 + 15477 mRNA_7109 0.72 +0.7
905,785 - 15477 mRNA_7109 0.84 +0.6
905,787 + 15477 mRNA_7109 0.84 -0.4
905,817 - 15477 mRNA_7109 0.85 -0.5
906,052 - +2.3
906,087 + +0.6
906,127 + -0.1
906,197 - -0.9
906,208 + -0.3
906,644 + -0.1
906,652 + -0.5
907,109 + 15478 mRNA_7110 0.35 -1.3

Or see this region's nucleotide sequence