Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7148

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15515 and 15516 are separated by 941 nucleotides15516 and 15517 are separated by 134 nucleotides mRNA_7147: 15515 - Hypothetical Protein, at 994,364 to 995,021 15515 mRNA_7148: 15516 - KOG2246 Galactosyltransferases, at 995,963 to 997,965 15516 mRNA_7149: 15517 - K12733 PPIL1 peptidyl-prolyl cis-trans isomerase-like 1, at 998,100 to 998,920 15517

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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994,974 + +0.1
995,077 - -0.3
995,358 - -0.1
995,368 + +0.8
995,382 - -0.5
995,392 + +2.5
995,560 - +1.0
995,570 - +1.5
995,574 - +1.6
995,582 - +0.6
995,583 + +1.5
995,595 + +0.6
995,598 + +0.6
995,776 - +0.7
995,902 + +1.1
996,037 + +2.8
996,059 - +0.4
996,173 + 15516 mRNA_7148 0.10 -0.2
996,434 + 15516 mRNA_7148 0.24 +1.4
996,608 + 15516 mRNA_7148 0.32 +0.2
996,609 + 15516 mRNA_7148 0.32 -0.0
996,638 - 15516 mRNA_7148 0.34 +1.7
996,967 - 15516 mRNA_7148 0.50 -0.3
997,077 + 15516 mRNA_7148 0.56 -0.0
997,920 + +0.2
998,061 + -0.0
998,061 + -0.8
998,062 - -1.5
998,242 + 15517 mRNA_7149 0.17 -0.4
998,309 - 15517 mRNA_7149 0.25 -0.9
998,664 + 15517 mRNA_7149 0.69 +0.5
998,681 + 15517 mRNA_7149 0.71 -0.2
998,770 + 15517 mRNA_7149 0.82 +0.7
998,795 + 15517 mRNA_7149 0.85 +1.5
998,801 - 15517 mRNA_7149 0.85 +0.5
998,812 - 15517 mRNA_7149 0.87 -1.8
998,941 + +0.3
998,956 + +0.5

Or see this region's nucleotide sequence