Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7153

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15520 and 15521 are separated by 384 nucleotides15521 and 15522 are separated by 170 nucleotides mRNA_7152: 15520 - Hypothetical Protein, at 1,002,724 to 1,003,659 15520 mRNA_7153: 15521 - Hypothetical Protein, at 1,004,044 to 1,005,448 15521 mRNA_7154: 15522 - Hypothetical Protein, at 1,005,619 to 1,007,584 15522

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,003,251 - 15520 mRNA_7152 0.56 +0.6
1,003,419 - 15520 mRNA_7152 0.74 -0.2
1,003,614 - -1.4
1,003,645 - +0.8
1,003,681 - +0.5
1,003,684 + +0.8
1,003,695 + +0.4
1,003,697 + -0.3
1,003,716 + -1.2
1,003,738 - -1.5
1,003,743 - +1.2
1,003,822 + -0.0
1,003,829 + +1.3
1,003,843 - -0.3
1,003,845 - +0.6
1,003,845 - +0.3
1,003,864 + +0.3
1,003,868 - -0.1
1,003,878 + +1.2
1,003,883 + +0.1
1,003,886 + -0.1
1,003,893 - -1.3
1,004,023 - +0.3
1,004,031 - +2.0
1,004,035 + +0.1
1,004,044 + +2.5
1,004,162 + +0.8
1,004,174 - +1.4
1,004,174 - +1.0
1,004,181 + -0.8
1,004,183 - +0.7
1,004,193 - 15521 mRNA_7153 0.11 -0.0
1,004,312 - 15521 mRNA_7153 0.19 -1.1
1,004,331 + 15521 mRNA_7153 0.20 +0.9
1,004,347 + 15521 mRNA_7153 0.22 -0.7
1,004,475 + 15521 mRNA_7153 0.31 +0.8
1,004,498 - 15521 mRNA_7153 0.32 +0.7
1,004,506 + 15521 mRNA_7153 0.33 +0.6
1,004,637 - 15521 mRNA_7153 0.42 +0.1
1,004,659 + 15521 mRNA_7153 0.44 -0.6
1,004,668 + 15521 mRNA_7153 0.44 +0.5
1,004,791 - 15521 mRNA_7153 0.53 -0.3
1,004,800 + 15521 mRNA_7153 0.54 +1.1
1,004,804 + 15521 mRNA_7153 0.54 +3.0
1,004,887 - 15521 mRNA_7153 0.60 +0.5
1,005,052 - 15521 mRNA_7153 0.72 +0.9
1,005,421 + +0.4
1,005,531 + -0.7
1,005,565 + +0.2
1,005,576 - +0.1
1,005,682 - -0.1
1,005,698 - +0.5
1,005,726 + -1.2
1,005,734 - +0.3
1,005,858 + 15522 mRNA_7154 0.12 -0.3

Or see this region's nucleotide sequence