Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7212

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15579 and 15580 are separated by 458 nucleotides15580 and 15581 are separated by 309 nucleotides mRNA_7211: 15579 - HMMPfam-Fungal specific transcription factor domain-PF11951,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,SUPERFAMILY--SSF57701, at 1,140,051 to 1,142,038 15579 mRNA_7212: 15580 - KOG3764 Vesicular amine transporter, at 1,142,497 to 1,144,513 15580 mRNA_7213: 15581 - K14636 SLC18A3, VACHT MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3, at 1,144,823 to 1,146,874 15581

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,141,522 + 15579 mRNA_7211 0.74 -0.0
1,141,522 + 15579 mRNA_7211 0.74 +0.1
1,142,059 - -0.5
1,142,076 - -0.2
1,142,084 - -0.3
1,142,126 + +0.2
1,142,202 + +0.8
1,142,236 - +1.6
1,142,253 - +2.0
1,142,268 - -0.6
1,142,348 - +0.2
1,142,356 - -1.7
1,142,361 - -0.7
1,142,362 - -0.1
1,142,364 + +1.5
1,142,365 + +0.4
1,142,367 - +1.3
1,142,379 - +0.3
1,142,414 - +0.5
1,142,421 - -1.6
1,142,421 - +0.2
1,142,421 - +0.3
1,142,436 + -1.0
1,142,548 + +1.8
1,142,549 - +0.3
1,142,581 + +0.4
1,142,729 + 15580 mRNA_7212 0.12 -0.7
1,142,731 - 15580 mRNA_7212 0.12 +0.3
1,142,736 - 15580 mRNA_7212 0.12 -0.4
1,142,842 - 15580 mRNA_7212 0.17 -1.1
1,142,859 + 15580 mRNA_7212 0.18 +0.1
1,143,141 - 15580 mRNA_7212 0.32 +0.3
1,143,395 - 15580 mRNA_7212 0.45 +0.5
1,143,415 - 15580 mRNA_7212 0.46 -0.3
1,144,008 + 15580 mRNA_7212 0.75 +0.2
1,144,012 - 15580 mRNA_7212 0.75 +2.2
1,144,014 + 15580 mRNA_7212 0.75 +1.9
1,144,135 - 15580 mRNA_7212 0.81 -0.1
1,144,150 + 15580 mRNA_7212 0.82 +0.4
1,144,410 + +0.2
1,144,476 + +2.4
1,144,525 - +1.3
1,144,568 - -0.7
1,144,747 - -0.5
1,144,763 - +0.1
1,145,055 + 15581 mRNA_7213 0.11 +0.2
1,145,206 + 15581 mRNA_7213 0.19 -0.5
1,145,471 - 15581 mRNA_7213 0.32 +2.1

Or see this region's nucleotide sequence