Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7256

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15623 and 15624 are separated by 299 nucleotides15624 and 15625 are separated by 93 nucleotides mRNA_7255: 15623 - Hypothetical Protein, at 1,227,615 to 1,231,158 15623 mRNA_7256: 15624 - BLAST protein kinase-like domain containing protein [Rh..., at 1,231,458 to 1,233,472 15624 mRNA_7257: 15625 - ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 1,233,566 to 1,236,513 15625

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
1,230,715 - 15623 mRNA_7255 0.87 +0.6
1,230,772 - 15623 mRNA_7255 0.89 -0.2
1,230,777 + 15623 mRNA_7255 0.89 +0.8
1,230,809 + -2.2
1,230,812 - +0.8
1,230,813 - -3.1
1,230,923 - +0.9
1,230,952 + +1.1
1,231,086 + +1.8
1,231,192 - +0.4
1,231,301 - +0.9
1,231,322 + -1.9
1,231,352 - -0.1
1,231,370 - -0.0
1,231,371 + +0.3
1,231,374 + -0.4
1,231,643 - +0.6
1,231,730 - 15624 mRNA_7256 0.13 +1.5
1,231,949 + 15624 mRNA_7256 0.24 -0.0
1,231,955 + 15624 mRNA_7256 0.25 +0.8
1,232,185 - 15624 mRNA_7256 0.36 -0.1
1,232,401 - 15624 mRNA_7256 0.47 -0.8
1,232,655 - 15624 mRNA_7256 0.59 -0.4
1,232,939 - 15624 mRNA_7256 0.73 -0.9
1,232,957 - 15624 mRNA_7256 0.74 +1.6
1,233,295 - +0.2
1,233,446 - +1.0
1,233,447 - +1.6
1,233,503 - +0.2
1,233,558 + +2.2
1,233,800 + -0.0
1,233,846 - +1.5
1,234,023 + 15625 mRNA_7257 0.16 -0.0
1,234,176 - 15625 mRNA_7257 0.21 -1.4
1,234,283 + 15625 mRNA_7257 0.24 +0.2
1,234,336 - 15625 mRNA_7257 0.26 +1.1
1,234,407 + 15625 mRNA_7257 0.29 +1.5
1,234,415 - 15625 mRNA_7257 0.29 +2.0
1,234,416 + 15625 mRNA_7257 0.29 -0.6

Or see this region's nucleotide sequence