Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7293

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15660 and 15661 are separated by 232 nucleotides15661 and 15662 are separated by 610 nucleotides mRNA_7292: 15660 - SUPERFAMILY--SSF56112, at 1,318,921 to 1,320,950 15660 mRNA_7293: 15661 - Hypothetical Protein, at 1,321,183 to 1,322,494 15661 mRNA_7294: 15662 - HMMPfam-F-box-like-PF12937, at 1,323,105 to 1,324,702 15662

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
1,320,241 - 15660 mRNA_7292 0.65 -0.3
1,320,328 + 15660 mRNA_7292 0.69 +0.8
1,320,416 + 15660 mRNA_7292 0.74 +1.6
1,320,438 - 15660 mRNA_7292 0.75 -0.1
1,320,603 - 15660 mRNA_7292 0.83 -0.1
1,320,768 + +0.0
1,320,862 - +0.2
1,320,962 + +0.1
1,321,232 - +0.3
1,321,244 + +2.4
1,321,255 + -0.1
1,321,304 + -1.1
1,321,484 + 15661 mRNA_7293 0.23 -1.1
1,321,487 - 15661 mRNA_7293 0.23 +0.5
1,321,528 - 15661 mRNA_7293 0.26 +1.1
1,321,531 + 15661 mRNA_7293 0.27 +0.3
1,321,544 - 15661 mRNA_7293 0.28 -2.4
1,321,565 + 15661 mRNA_7293 0.29 +1.1
1,321,652 - 15661 mRNA_7293 0.36 +0.3
1,321,783 - 15661 mRNA_7293 0.46 -0.3
1,321,823 - 15661 mRNA_7293 0.49 +0.2
1,321,830 - 15661 mRNA_7293 0.49 -0.1
1,322,007 + 15661 mRNA_7293 0.63 -1.3
1,322,455 + -0.3
1,322,474 - -0.9
1,322,552 - +0.5
1,322,562 + +0.4
1,322,575 + +0.5
1,322,709 - +0.4
1,322,710 + +1.1
1,322,735 + -0.1
1,322,853 + +0.2
1,322,878 + -0.5
1,322,918 + -0.7
1,323,044 + -0.2
1,323,110 + -1.3
1,323,153 - +0.7
1,323,158 - +0.3
1,323,161 + -0.8
1,323,244 - +0.4
1,323,340 - 15662 mRNA_7294 0.15 -0.7

Or see this region's nucleotide sequence