Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7310

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15678 and 15679 are separated by 652 nucleotides mRNA_7310: 15678 - BLAST cytochrome P450 3A4 [Neurospora crassa OR74A], at 1,370,309 to 1,371,999 15678 mRNA_7311: 15679 - K00940 ndk, NME nucleoside-diphosphate kinase, at 1,372,652 to 1,373,595 15679

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,370,049 - +1.2
1,370,137 + -0.8
1,370,145 - +1.0
1,370,146 + -2.6
1,370,147 - +0.1
1,370,156 + -0.3
1,370,161 + +0.5
1,370,190 - +0.7
1,370,206 + +1.8
1,370,214 + +1.8
1,370,217 - -1.0
1,370,218 + +0.5
1,370,220 - +1.0
1,370,221 + +2.7
1,370,226 - -2.0
1,370,230 - +0.3
1,370,230 - +1.9
1,370,233 + +1.3
1,370,234 - -1.3
1,370,238 + -0.5
1,370,241 + +1.3
1,370,250 + -2.9
1,370,254 + +0.2
1,370,254 + +1.3
1,370,256 + +2.0
1,370,270 + -0.0
1,370,277 + +0.3
1,370,307 + +0.8
1,370,370 - -1.5
1,370,382 + +0.4
1,370,382 + +0.4
1,370,394 - +0.5
1,370,517 - 15678 mRNA_7310 0.12 -0.3
1,370,524 + 15678 mRNA_7310 0.13 +0.4
1,370,543 - 15678 mRNA_7310 0.14 +0.6
1,370,584 - 15678 mRNA_7310 0.16 +0.8
1,370,590 + 15678 mRNA_7310 0.17 +1.4
1,370,639 - 15678 mRNA_7310 0.20 +0.2
1,370,666 - 15678 mRNA_7310 0.21 +0.3
1,370,698 + 15678 mRNA_7310 0.23 +0.0
1,370,704 + 15678 mRNA_7310 0.23 +0.8
1,370,784 - 15678 mRNA_7310 0.28 +0.0
1,370,832 - 15678 mRNA_7310 0.31 +1.0
1,370,989 - 15678 mRNA_7310 0.40 -0.0
1,370,999 - 15678 mRNA_7310 0.41 -1.1
1,371,150 - 15678 mRNA_7310 0.50 +1.1
1,371,548 - 15678 mRNA_7310 0.73 -0.1
1,371,588 + 15678 mRNA_7310 0.76 -1.1
1,371,764 + 15678 mRNA_7310 0.86 +1.6
1,372,142 + -0.1
1,372,154 + +1.3
1,372,247 - -1.2
1,372,429 - -1.0
1,372,443 + -0.5
1,372,615 + -0.3
1,372,784 - 15679 mRNA_7311 0.14 -1.0

Or see this region's nucleotide sequence