Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7333

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15700 and 15701 are separated by 407 nucleotides15701 and 15702 are separated by 78 nucleotides mRNA_7332: 15700 - K05542 DUS1 tRNA-dihydrouridine synthase 1, at 26,472 to 27,994 15700 mRNA_7333: 15701 - SUPERFAMILY--SSF52047, at 28,402 to 29,421 15701 mRNA_7334: 15702 - HMMPfam-RTA1 like protein-PF04479, at 29,500 to 31,086 15702

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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27,576 + 15700 mRNA_7332 0.72 +1.1
27,627 - 15700 mRNA_7332 0.76 -0.1
27,726 - 15700 mRNA_7332 0.82 -1.6
27,732 + 15700 mRNA_7332 0.83 -1.2
27,878 + -0.5
28,011 + +0.6
28,056 - +0.5
28,056 - -0.2
28,314 - +0.3
28,314 - +0.2
28,315 + +2.1
28,319 + -0.3
28,459 + +1.1
28,468 + -0.9
28,471 + +0.2
28,715 - 15701 mRNA_7333 0.31 +1.3
28,900 + 15701 mRNA_7333 0.49 +0.6
28,901 - 15701 mRNA_7333 0.49 +1.5
29,051 + 15701 mRNA_7333 0.64 -0.1
29,314 - 15701 mRNA_7333 0.89 +1.1
29,371 - -0.2
29,516 - +0.5
29,620 - -0.0
29,620 + +1.9
29,664 - 15702 mRNA_7334 0.10 -1.6
29,702 - 15702 mRNA_7334 0.13 +0.4
29,913 - 15702 mRNA_7334 0.26 -1.6
29,970 + 15702 mRNA_7334 0.30 -0.3
30,341 - 15702 mRNA_7334 0.53 -0.2

Or see this region's nucleotide sequence