Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7391

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15758 and 15759 are separated by 119 nucleotides15759 and 15760 are separated by 374 nucleotides mRNA_7390: 15758 - HMMPfam-Ubiquinol-cytochrome C reductase hinge protein-PF02320,SUPERFAMILY--SSF81531, at 168,829 to 169,694 15758 mRNA_7391: 15759 - K00547 mmuM, BHMT2 homocysteine S-methyltransferase, at 169,814 to 171,234 15759 mRNA_7392: 15760 - Hypothetical Protein, at 171,609 to 172,297 15760

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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169,024 + 15758 mRNA_7390 0.23 +1.1
169,295 + 15758 mRNA_7390 0.54 +0.2
169,458 + 15758 mRNA_7390 0.73 +1.1
169,466 - 15758 mRNA_7390 0.74 +0.6
169,561 - 15758 mRNA_7390 0.85 +0.2
169,568 - 15758 mRNA_7390 0.85 +1.0
169,583 + 15758 mRNA_7390 0.87 -0.2
169,614 + +0.2
169,618 + +0.3
169,629 - -1.0
169,709 + +1.0
169,723 - -0.4
169,730 - +1.5
169,741 - +1.3
169,752 + +0.2
169,764 + -0.4
169,766 - +0.7
169,913 - -0.4
170,183 - 15759 mRNA_7391 0.26 +0.3
170,497 + 15759 mRNA_7391 0.48 +0.6
170,704 + 15759 mRNA_7391 0.63 +0.1
171,362 - +1.2
171,486 - +0.6
172,071 + 15760 mRNA_7392 0.67 +1.0

Or see this region's nucleotide sequence