Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7488

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15856 and 15857 are separated by 148 nucleotides mRNA_7488: 15856 - K00558 DNMT1, dcm DNA (cytosine-5)-methyltransferase 1, at 403,840 to 407,882 15856 mRNA_7489: 15857 - K12351 SMPD2 sphingomyelin phosphodiesterase 2, at 408,031 to 409,638 15857

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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403,436 - +0.5
403,525 - +0.3
403,590 + +1.6
404,314 + 15856 mRNA_7488 0.12 +0.2
404,334 - 15856 mRNA_7488 0.12 +0.7
404,471 - 15856 mRNA_7488 0.16 -0.3
404,495 - 15856 mRNA_7488 0.16 -0.3
404,635 - 15856 mRNA_7488 0.20 +2.1
404,650 + 15856 mRNA_7488 0.20 +1.8
404,724 + 15856 mRNA_7488 0.22 +0.4
405,356 + 15856 mRNA_7488 0.37 -0.4
405,528 + 15856 mRNA_7488 0.42 +1.1
405,805 - 15856 mRNA_7488 0.49 +0.2
405,953 - 15856 mRNA_7488 0.52 +1.3
406,012 + 15856 mRNA_7488 0.54 +0.4
406,140 - 15856 mRNA_7488 0.57 +0.0
406,336 - 15856 mRNA_7488 0.62 +0.2
406,378 + 15856 mRNA_7488 0.63 +0.1
406,589 + 15856 mRNA_7488 0.68 +0.9
407,117 + 15856 mRNA_7488 0.81 -0.3
407,162 + 15856 mRNA_7488 0.82 -0.5
407,556 - -0.7
407,566 - +1.0
407,856 - -0.4
407,902 - -0.1
408,016 + -0.6
408,330 + 15857 mRNA_7489 0.19 -1.8
408,409 - 15857 mRNA_7489 0.24 -0.5
408,438 - 15857 mRNA_7489 0.25 +0.6
408,462 - 15857 mRNA_7489 0.27 +0.9

Or see this region's nucleotide sequence