Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7496

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15863 and 15864 are separated by 597 nucleotides15864 and 15865 are separated by 443 nucleotides mRNA_7495: 15863 - K10089 M6PR cation-dependent mannose-6-phosphate receptor, at 425,956 to 427,400 15863 mRNA_7496: 15864 - K03935 NDUFS2 NADH dehydrogenase (ubiquinone) Fe-S protein 2, at 427,998 to 430,216 15864 mRNA_7497: 15865 - K03685 rnc, DROSHA, RNT1 ribonuclease III, at 430,660 to 431,671 15865

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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427,263 - +0.5
427,276 + +0.4
427,403 - +1.3
427,414 + +0.0
427,414 - -0.4
427,501 - +0.4
427,560 - -0.8
427,563 - +0.2
427,784 + -1.1
427,872 + -0.4
427,877 - +0.2
427,898 + +0.3
428,006 + +1.1
428,012 + -0.2
428,015 + +0.3
428,042 + -0.1
430,296 + +0.8
430,539 - +0.6
430,560 + -1.2
430,603 + -0.8
430,890 + 15865 mRNA_7497 0.23 +0.2
430,983 + 15865 mRNA_7497 0.32 -0.1
431,021 + 15865 mRNA_7497 0.36 -0.2
431,028 + 15865 mRNA_7497 0.36 -0.1
431,159 + 15865 mRNA_7497 0.49 -0.0
431,160 + 15865 mRNA_7497 0.49 +0.1

Or see this region's nucleotide sequence