Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7503

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15870 and 15871 are separated by 938 nucleotides15871 and 15872 are separated by 682 nucleotides mRNA_7502: 15870 - K19788 OLA1 obg-like ATPase 1, at 444,835 to 446,831 15870 mRNA_7503: 15871 - Hypothetical Protein, at 447,770 to 449,407 15871 mRNA_7504: 15872 - KOG0621 Phospholipid scramblase, at 450,090 to 451,358 15872

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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446,846 - -0.3
446,879 + +0.8
447,023 + +1.9
447,049 + -0.7
447,161 + -0.7
447,173 + -0.6
447,308 + -0.2
447,443 - +1.0
447,458 + +0.2
447,463 - -0.8
447,590 - +0.3
447,606 - +0.3
447,607 + -0.1
447,610 - -0.8
447,615 - -1.7
447,620 + -0.2
447,635 + -0.6
447,738 + -0.0
447,740 - +1.0
447,770 + +0.2
448,044 + 15871 mRNA_7503 0.17 -0.0
448,050 - 15871 mRNA_7503 0.17 -0.0
448,323 - 15871 mRNA_7503 0.34 +0.7
448,325 - 15871 mRNA_7503 0.34 +1.5
448,332 + 15871 mRNA_7503 0.34 +0.1
448,341 - 15871 mRNA_7503 0.35 -1.2
448,604 + 15871 mRNA_7503 0.51 +0.3
448,615 - 15871 mRNA_7503 0.52 -0.1
449,063 + 15871 mRNA_7503 0.79 -0.0
449,483 + +0.7
449,505 - -2.5
449,582 + +0.9
449,606 + +0.8
449,918 + +0.2
449,929 + +1.3
450,228 - 15872 mRNA_7504 0.11 +0.0
450,234 + 15872 mRNA_7504 0.11 +1.0
450,326 - 15872 mRNA_7504 0.19 +0.1
450,327 + 15872 mRNA_7504 0.19 +0.2
450,359 + 15872 mRNA_7504 0.21 +2.4

Or see this region's nucleotide sequence