Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7524

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15891 and 15892 are separated by 246 nucleotides15892 and 15893 are separated by 109 nucleotides15893 and 15894 are separated by 110 nucleotides mRNA_7523: 15891 - KOG0143 Iron/ascorbate family oxidoreductases, at 492,081 to 493,296 15891 mRNA_7524: 15892 - BLAST putative heatshock protein [Serpula lacrymans var..., at 493,543 to 495,211 15892 mRNA_7525: 15893 - KOG3425 Uncharacterized conserved protein, at 495,321 to 495,867 15893 mRNA_7526: 15894 - K13289 CTSA, CPY cathepsin A (carboxypeptidase C), at 495,978 to 498,115 15894

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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492,904 + 15891 mRNA_7523 0.68 +0.2
492,919 + 15891 mRNA_7523 0.69 +0.2
492,921 + 15891 mRNA_7523 0.69 -0.8
493,059 + 15891 mRNA_7523 0.80 +0.6
493,066 + 15891 mRNA_7523 0.81 +1.0
493,344 - +1.4
493,349 - +0.8
493,361 + +0.6
493,383 - +0.7
493,498 + -0.8
493,524 - +1.9
493,526 + +1.3
493,540 - +0.2
493,656 + +1.1
493,823 - 15892 mRNA_7524 0.17 +1.0
493,933 + 15892 mRNA_7524 0.23 +0.2
493,985 - 15892 mRNA_7524 0.26 -1.0
495,157 - -0.0
495,613 - 15893 mRNA_7525 0.53 -0.1
495,637 + 15893 mRNA_7525 0.58 -0.7
495,738 + 15893 mRNA_7525 0.76 +0.5
495,756 + 15893 mRNA_7525 0.80 +0.7
495,765 + 15893 mRNA_7525 0.81 -0.2
495,890 + +2.0
495,893 + +0.7
495,896 + -0.8
495,897 + +0.9
495,914 - +0.9
495,929 - -0.1
495,935 - -0.4
495,945 - -1.5
495,946 - +0.1
495,951 - +0.2
496,056 - -0.9
496,075 + -0.4
496,091 + -0.3

Or see this region's nucleotide sequence