Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7608

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15975 and 15976 are separated by 276 nucleotides15976 and 15977 are separated by 65 nucleotides mRNA_7607: 15975 - BLAST UPF0428 CXorf56-like protein, putative [Rhizoctonia s..., at 665,409 to 666,288 15975 mRNA_7608: 15976 - K10847 XPA DNA-repair protein complementing XP-A cells, at 666,565 to 667,853 15976 mRNA_7609: 15977 - KOG3239 Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1), at 667,919 to 668,964 15977

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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665,668 + 15975 mRNA_7607 0.29 -0.3
665,673 - 15975 mRNA_7607 0.30 +3.0
665,679 + 15975 mRNA_7607 0.31 +1.0
665,685 + 15975 mRNA_7607 0.31 +0.0
665,834 - 15975 mRNA_7607 0.48 -0.0
666,224 - +0.7
666,667 - -0.0
666,668 + +0.9
666,675 + -1.2
666,676 + +0.1
666,678 + +0.0
666,708 - 15976 mRNA_7608 0.11 -0.4
666,841 + 15976 mRNA_7608 0.21 +2.6
667,141 + 15976 mRNA_7608 0.45 +1.0
667,180 + 15976 mRNA_7608 0.48 +0.9
667,417 + 15976 mRNA_7608 0.66 +0.0
667,427 - 15976 mRNA_7608 0.67 +0.7
667,698 - 15976 mRNA_7608 0.88 +0.9
667,799 + -0.3
668,433 - 15977 mRNA_7609 0.49 -0.7

Or see this region's nucleotide sequence