Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7627

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15994 and 15995 are separated by 172 nucleotides15995 and 15996 are separated by 87 nucleotides mRNA_7626: 15994 - K00273 DAO, aao D-amino-acid oxidase, at 709,563 to 711,029 15994 mRNA_7627: 15995 - K01273 DPEP membrane dipeptidase, at 711,202 to 712,775 15995 mRNA_7628: 15996 - KOG1721 FOG Zn-finger, at 712,863 to 715,455 15996

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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710,380 + 15994 mRNA_7626 0.56 -0.2
710,380 - 15994 mRNA_7626 0.56 -0.8
710,387 - 15994 mRNA_7626 0.56 -0.3
710,505 - 15994 mRNA_7626 0.64 -0.5
710,689 - 15994 mRNA_7626 0.77 +0.7
710,913 - +1.7
710,969 + -1.4
710,987 - -0.6
711,001 + +0.1
711,010 + -0.2
711,075 - -1.8
711,084 - +1.5
711,084 - +0.4
711,087 - -0.0
711,098 + -0.8
711,144 - -0.2
711,193 - +0.6
711,242 - +0.3
711,303 + +1.5
711,424 + 15995 mRNA_7627 0.14 -0.0
711,429 + 15995 mRNA_7627 0.14 +0.2
711,664 - 15995 mRNA_7627 0.29 +1.4
712,103 + 15995 mRNA_7627 0.57 +0.1
712,140 + 15995 mRNA_7627 0.60 +0.5
712,156 - 15995 mRNA_7627 0.61 +0.7
712,264 - 15995 mRNA_7627 0.67 +0.1
712,578 - 15995 mRNA_7627 0.87 +1.0
712,603 - 15995 mRNA_7627 0.89 -1.2
712,717 + +0.2
712,872 + -0.3
713,154 - 15996 mRNA_7628 0.11 -0.2
713,454 - 15996 mRNA_7628 0.23 +1.8
713,477 - 15996 mRNA_7628 0.24 +0.6
713,516 + 15996 mRNA_7628 0.25 -1.3
713,550 + 15996 mRNA_7628 0.26 +2.5
713,602 - 15996 mRNA_7628 0.28 +1.8

Or see this region's nucleotide sequence