Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7692

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16059 and 16060 are separated by 614 nucleotides16060 and 16061 are separated by 128 nucleotides mRNA_7691: 16059 - K10770 ALKBH8 alkylated DNA repair protein alkB homolog 8, at 849,187 to 849,939 16059 mRNA_7692: 16060 - HMMPfam-Cell division control protein 14, SIN component-PF08045, at 850,554 to 851,989 16060 mRNA_7693: 16061 - SUPERFAMILY--SSF57701, at 852,118 to 853,465 16061

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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849,594 + 16059 mRNA_7691 0.54 -0.3
849,830 + 16059 mRNA_7691 0.85 +1.2
849,977 + +0.9
849,985 + +1.1
850,133 + +0.8
850,274 - +0.4
850,289 + +0.3
850,299 + -0.1
850,419 - +0.1
850,582 - +2.4
850,711 - 16060 mRNA_7692 0.11 +1.0
850,732 + 16060 mRNA_7692 0.12 +0.6
850,765 + 16060 mRNA_7692 0.15 +0.4
851,009 + 16060 mRNA_7692 0.32 -0.1
851,102 + 16060 mRNA_7692 0.38 +0.2
851,138 - 16060 mRNA_7692 0.41 -1.1
851,147 - 16060 mRNA_7692 0.41 -0.5
851,267 + 16060 mRNA_7692 0.50 -0.3
851,302 - 16060 mRNA_7692 0.52 +1.5
851,324 + 16060 mRNA_7692 0.54 -1.3
851,324 + 16060 mRNA_7692 0.54 +0.6
851,453 - 16060 mRNA_7692 0.63 +0.8
851,585 - 16060 mRNA_7692 0.72 +0.2
851,599 + 16060 mRNA_7692 0.73 +1.2
851,624 - 16060 mRNA_7692 0.75 +0.4
851,628 - 16060 mRNA_7692 0.75 +0.4
851,637 + 16060 mRNA_7692 0.75 -0.3
851,878 + -0.9
851,878 + +0.0
851,878 + +0.5
852,031 + -0.1
852,048 - +0.2
852,076 + -0.5
852,284 + 16061 mRNA_7693 0.12 -0.4
852,483 - 16061 mRNA_7693 0.27 -1.0
852,483 + 16061 mRNA_7693 0.27 +0.5
852,550 + 16061 mRNA_7693 0.32 -0.8
852,551 + 16061 mRNA_7693 0.32 -0.1
852,663 - 16061 mRNA_7693 0.40 -0.2
852,891 - 16061 mRNA_7693 0.57 -0.3
852,947 - 16061 mRNA_7693 0.61 -0.3

Or see this region's nucleotide sequence