Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7696

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16064 and 16065 are separated by 268 nucleotides mRNA_7696: 16064 - K11269 CTF18, CHL12 chromosome transmission fidelity protein 18, at 858,944 to 862,198 16064 mRNA_7697: 16065 - K00815 TAT tyrosine aminotransferase, at 862,467 to 863,875 16065

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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857,961 - +0.9
857,963 - -1.1
858,060 - +0.3
858,071 - -5.7
858,073 + -0.9
858,074 - +1.2
858,082 - +0.0
858,529 + +0.0
858,667 - -0.4
858,740 + +0.1
858,921 + +1.3
859,097 - -0.7
859,401 + 16064 mRNA_7696 0.14 +0.5
860,107 - 16064 mRNA_7696 0.36 -2.1
860,120 - 16064 mRNA_7696 0.36 -2.2
860,126 + 16064 mRNA_7696 0.36 +1.2
860,729 + 16064 mRNA_7696 0.55 -1.6
860,736 - 16064 mRNA_7696 0.55 +1.2
860,921 + 16064 mRNA_7696 0.61 -2.9
861,005 + 16064 mRNA_7696 0.63 +1.1
861,008 + 16064 mRNA_7696 0.63 +1.9
861,263 + 16064 mRNA_7696 0.71 +1.4
861,299 - 16064 mRNA_7696 0.72 +0.5
861,310 + 16064 mRNA_7696 0.73 -2.6
861,541 + 16064 mRNA_7696 0.80 -1.3
861,592 - 16064 mRNA_7696 0.81 +1.1
862,328 - -1.0
862,369 + +0.3
862,372 - +0.2
862,393 - -0.4
862,603 + -0.7
862,674 - 16065 mRNA_7697 0.15 +0.5
862,835 - 16065 mRNA_7697 0.26 +0.5
862,855 + 16065 mRNA_7697 0.28 +0.8
862,856 - 16065 mRNA_7697 0.28 +1.3
862,857 + 16065 mRNA_7697 0.28 -0.2
863,128 + 16065 mRNA_7697 0.47 +0.1

Or see this region's nucleotide sequence